J3_6N8K_030
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAC*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8K_030 not in the Motif Atlas
- Homologous match to J3_8P9A_052
- Geometric discrepancy: 0.1947
- The information below is about J3_8P9A_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37832.1
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
6N8K|1|1|G|1230
6N8K|1|1|A|1231
6N8K|1|1|C|1232
*
6N8K|1|1|G|1256
6N8K|1|1|C|1257
6N8K|1|1|U|1258
6N8K|1|1|A|1259
6N8K|1|1|A|1260
6N8K|1|1|G|1261
6N8K|1|1|G|1262
*
6N8K|1|1|C|1277
6N8K|1|1|A|1278
6N8K|1|1|C|1279
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain W
- Ribosome assembly factor MRT4
Coloring options: