3D structure

PDB id
6N8L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
AGAUGG*CGUUUCAAAGG*CACCAU
Length
23 nucleotides
Bulged bases
6N8L|1|1|C|1556, 6N8L|1|1|A|1558, 6N8L|1|1|C|1581
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6N8L|1|1|A|1537
6N8L|1|1|G|1538
6N8L|1|1|A|1539
6N8L|1|1|U|1540
6N8L|1|1|G|1541
6N8L|1|1|G|1542
*
6N8L|1|1|C|1551
6N8L|1|1|G|1552
6N8L|1|1|U|1553
6N8L|1|1|U|1554
6N8L|1|1|U|1555
6N8L|1|1|C|1556
6N8L|1|1|A|1557
6N8L|1|1|A|1558
6N8L|1|1|A|1559
6N8L|1|1|G|1560
6N8L|1|1|G|1561
*
6N8L|1|1|C|1579
6N8L|1|1|A|1580
6N8L|1|1|C|1581
6N8L|1|1|C|1582
6N8L|1|1|A|1583
6N8L|1|1|U|1584

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 3
5.8S ribosomal RNA; 5.8S rRNA
Chain A
60S ribosomal protein L2-A
Chain G
60S ribosomal protein L8-A
Chain N
60S ribosomal protein L15-A
Chain X
60S ribosomal protein L25
Chain j
60S ribosomal protein L37-A

Coloring options:

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