J3_6N8L_036
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 6N8L|1|1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8L_036 not in the Motif Atlas
- Homologous match to J3_8P9A_050
- Geometric discrepancy: 0.1316
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6N8L|1|1|A|828
6N8L|1|1|U|829
6N8L|1|1|A|830
6N8L|1|1|G|831
*
6N8L|1|1|C|863
6N8L|1|1|G|864
6N8L|1|1|U|865
6N8L|1|1|A|866
6N8L|1|1|G|867
*
6N8L|1|1|U|892
6N8L|1|1|C|893
6N8L|1|1|G|894
6N8L|1|1|A|895
6N8L|1|1|A|896
6N8L|1|1|U|897
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain R
- 60S ribosomal protein L19-A
- Chain g
- 60S ribosomal protein L34-A
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