J3_6N8L_038
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 6N8L|1|1|G|2549, 6N8L|1|1|U|2550, 6N8L|1|1|U|2551, 6N8L|1|1|C|2552, 6N8L|1|1|U|2553, 6N8L|1|1|A|2554, 6N8L|1|1|U|2558, 6N8L|1|1|U|2559, 6N8L|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8L_038 not in the Motif Atlas
- Homologous match to J3_8CRE_020
- Geometric discrepancy: 0.1879
- The information below is about J3_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6N8L|1|1|A|2529
6N8L|1|1|G|2530
6N8L|1|1|C|2531
6N8L|1|1|U|2532
*
6N8L|1|1|A|2547
6N8L|1|1|C|2548
6N8L|1|1|G|2549
6N8L|1|1|U|2550
6N8L|1|1|U|2551
6N8L|1|1|C|2552
6N8L|1|1|U|2553
6N8L|1|1|A|2554
6N8L|1|1|G|2555
6N8L|1|1|C|2556
6N8L|1|1|A|2557
6N8L|1|1|U|2558
6N8L|1|1|U|2559
6N8L|1|1|C|2560
6N8L|1|1|A|2561
6N8L|1|1|A|2562
6N8L|1|1|G|2563
*
6N8L|1|1|U|2578
6N8L|1|1|G|2579
6N8L|1|1|A|2580
6N8L|1|1|U|2581
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
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