J3_6N8M_020
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6N8M|1|A|A|398, 6N8M|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8M_020 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0902
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6N8M|1|A|A|369
6N8M|1|A|U|370
6N8M|1|A|G|371
6N8M|1|A|A|372
6N8M|1|A|A|373
6N8M|1|A|A|374
6N8M|1|A|A|375
6N8M|1|A|G|376
6N8M|1|A|A|377
6N8M|1|A|A|378
6N8M|1|A|C|379
*
6N8M|1|A|G|390
6N8M|1|A|A|391
6N8M|1|A|G|392
6N8M|1|A|U|393
6N8M|1|A|G|394
6N8M|1|A|A|395
6N8M|1|A|A|396
6N8M|1|A|A|397
6N8M|1|A|A|398
6N8M|1|A|A|399
6N8M|1|A|G|400
6N8M|1|A|U|401
6N8M|1|A|A|402
6N8M|1|A|C|403
6N8M|1|A|G|404
*
6N8M|1|C|C|19
6N8M|1|C|U|20
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain C
- 5.8S RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain c
- 60S ribosomal protein L17-A
- Chain l
- 60S ribosomal protein L26-A
- Chain y
- 60S ribosomal protein L39
Coloring options: