J3_6N8N_030
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 6N8N|1|A|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8N_030 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.1151
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6N8N|1|A|U|502
6N8N|1|A|C|503
*
6N8N|1|A|G|588
6N8N|1|A|A|589
6N8N|1|A|G|590
6N8N|1|A|G|591
6N8N|1|A|A|592
6N8N|1|A|C|593
6N8N|1|A|U|594
6N8N|1|A|G|595
6N8N|1|A|C|596
6N8N|1|A|G|597
*
6N8N|1|A|C|606
6N8N|1|A|A|607
6N8N|1|A|A|608
6N8N|1|A|G|609
6N8N|1|A|G|610
6N8N|1|A|A|611
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain H
- 60S ribosomal protein L6-A
- Chain I
- 60S ribosomal protein L7-A
- Chain r
- 60S ribosomal protein L32
Coloring options: