J3_6N8N_032

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

6N8N|1|A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N8N_032 not in the Motif Atlas

Homologous match to J3_8P9A_050

Geometric discrepancy: 0.1402

The information below is about J3_8P9A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_21998.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6N8N|1|A|A|828
6N8N|1|A|U|829
6N8N|1|A|A|830
6N8N|1|A|G|831
*
6N8N|1|A|C|863
6N8N|1|A|G|864
6N8N|1|A|U|865
6N8N|1|A|A|866
6N8N|1|A|G|867
*
6N8N|1|A|U|892
6N8N|1|A|C|893
6N8N|1|A|G|894
6N8N|1|A|A|895
6N8N|1|A|A|896
6N8N|1|A|U|897

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain e

60S ribosomal protein L19-A

Chain t

60S ribosomal protein L34-A