J3_6N8N_040
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6N8N|1|C|U|60, 6N8N|1|C|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8N_040 not in the Motif Atlas
- Homologous match to J3_8CRE_027
- Geometric discrepancy: 0.1494
- The information below is about J3_8CRE_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6N8N|1|C|A|44
6N8N|1|C|C|45
*
6N8N|1|C|G|58
6N8N|1|C|A|59
6N8N|1|C|U|60
6N8N|1|C|A|61
6N8N|1|C|C|62
6N8N|1|C|G|63
6N8N|1|C|U|64
*
6N8N|1|C|A|96
6N8N|1|C|A|97
6N8N|1|C|U|98
6N8N|1|C|C|99
6N8N|1|C|U|100
Current chains
- Chain C
- 5.8S rRNA
Nearby chains
- Chain k
- 60S ribosomal protein L25
- Chain u
- 60S ribosomal protein L35-A
- Chain w
- 60S ribosomal protein L37-A
- Chain y
- 60S ribosomal protein L39
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