J3_6N8O_005
3D structure
- PDB id
- 6N8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 6N8O|1|A|A|896
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8O_005 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1168
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6N8O|1|A|A|828
6N8O|1|A|U|829
6N8O|1|A|A|830
6N8O|1|A|G|831
*
6N8O|1|A|C|863
6N8O|1|A|G|864
6N8O|1|A|U|865
6N8O|1|A|A|866
6N8O|1|A|G|867
*
6N8O|1|A|U|892
6N8O|1|A|C|893
6N8O|1|A|G|894
6N8O|1|A|A|895
6N8O|1|A|A|896
6N8O|1|A|U|897
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain D
- 60S ribosomal protein L2-A
- Chain e
- 60S ribosomal protein L19-A
- Chain t
- 60S ribosomal protein L34-A
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