J3_6N8O_010
3D structure
- PDB id
- 6N8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAC*GUAACU*AG
- Length
- 11 nucleotides
- Bulged bases
- 6N8O|1|A|A|1642
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8O_010 not in the Motif Atlas
- Homologous match to J3_5TBW_011
- Geometric discrepancy: 0.1515
- The information below is about J3_5TBW_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25670.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6N8O|1|A|C|1631
6N8O|1|A|A|1632
6N8O|1|A|C|1633
*
6N8O|1|A|G|1640
6N8O|1|A|U|1641
6N8O|1|A|A|1642
6N8O|1|A|A|1643
6N8O|1|A|C|1644
6N8O|1|A|U|1645
*
6N8O|1|A|A|1810
6N8O|1|A|G|1811
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain m
- 60S ribosomal protein L27-A
- Chain t
- 60S ribosomal protein L34-A
- Chain x
- 60S ribosomal protein L38
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