J3_6N8O_017
3D structure
- PDB id
- 6N8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6N8O|1|A|U|343, 6N8O|1|A|A|351, 6N8O|1|C|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8O_017 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0792
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
6N8O|1|A|C|340
6N8O|1|A|G|341
6N8O|1|A|A|342
6N8O|1|A|U|343
6N8O|1|A|A|344
6N8O|1|A|G|345
6N8O|1|A|C|346
6N8O|1|A|G|347
6N8O|1|A|A|348
6N8O|1|A|A|349
6N8O|1|A|C|350
6N8O|1|A|A|351
6N8O|1|A|A|352
6N8O|1|A|G|353
6N8O|1|A|U|354
6N8O|1|A|A|355
6N8O|1|A|C|356
*
6N8O|1|A|G|363
6N8O|1|A|G|364
6N8O|1|A|A|365
6N8O|1|A|A|366
6N8O|1|A|A|367
6N8O|1|A|G|368
*
6N8O|1|C|C|21
6N8O|1|C|U|22
6N8O|1|C|U|23
6N8O|1|C|G|24
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain l
- 60S ribosomal protein L26-A
- Chain w
- 60S ribosomal protein L37-A
- Chain y
- 60S ribosomal protein L39
Coloring options: