J3_6N8O_020

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

6N8O|1|A|A|1065, 6N8O|1|A|U|1094, 6N8O|1|A|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8O|1|A|U|986
6N8O|1|A|U|987
*
6N8O|1|A|A|1062
6N8O|1|A|G|1063
6N8O|1|A|A|1064
6N8O|1|A|A|1065
6N8O|1|A|G|1066
*
6N8O|1|A|C|1092
6N8O|1|A|A|1093
6N8O|1|A|U|1094
6N8O|1|A|U|1095
6N8O|1|A|U|1096
6N8O|1|A|G|1097
6N8O|1|A|A|1098

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain I

60S ribosomal protein L7-A

Chain g

60S ribosomal protein L21-A

Chain o

60S ribosomal protein L29