J3_6N9E_007

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9E_007 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1186

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6N9E|1|1A|C|1344
6N9E|1|1A|G|1345
6N9E|1|1A|U|1346
6N9E|1|1A|A|1347
6N9E|1|1A|A|1348
6N9E|1|1A|G|1349
*
6N9E|1|1A|C|1671
6N9E|1|1A|G|1672
6N9E|1|1A|G|1673
*
6N9E|1|1A|U|1686
6N9E|1|1A|C|1687
6N9E|1|1A|A|1688
6N9E|1|1A|G|1689

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains