J3_6N9E_012

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6N9E|1|1A|A|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9E_012 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.1084

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6N9E|1|1A|C|2529
6N9E|1|1A|A|2530
6N9E|1|1A|U|2531
6N9E|1|1A|C|2532
*
6N9E|1|1A|G|2557
6N9E|1|1A|U|2558
6N9E|1|1A|U|2559
*
6N9E|1|1A|A|2573
6N9E|1|1A|U|2574
6N9E|1|1A|U|2575
6N9E|1|1A|A|2576
6N9E|1|1A|A|2577
6N9E|1|1A|A|2578
6N9E|1|1A|G|2579

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S Ribosomal Protein L3

Chain 1O

50S Ribosomal Protein L14