J3_6N9E_072

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6N9E|1|1A|A|1655, 6N9E|1|1A|A|1656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9E_072 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1229

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6N9E|1|1A|C|1352
6N9E|1|1A|A|1353
6N9E|1|1A|A|1354
6N9E|1|1A|G|1355
*
6N9E|1|1A|C|1651
6N9E|1|1A|G|1652
6N9E|1|1A|C|1653
6N9E|1|1A|A|1654
6N9E|1|1A|A|1655
6N9E|1|1A|A|1656
6N9E|1|1A|C|1657
*
6N9E|1|1A|G|1666
6N9E|1|1A|U|1667
6N9E|1|1A|G|1668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34