J3_6N9F_026

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9F_026 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0875

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6N9F|1|2A|G|30
6N9F|1|2A|C|31
*
6N9F|1|2A|G|474
6N9F|1|2A|U|475
6N9F|1|2A|G|476
6N9F|1|2A|A|477
6N9F|1|2A|A|478
6N9F|1|2A|A|479
6N9F|1|2A|A|480
6N9F|1|2A|G|481
*
6N9F|1|2A|C|509
6N9F|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S Ribosomal Protein L20

Chain 2W

50S Ribosomal Protein L22

Chain 2Y

50S ribosomal protein L24