J3_6N9F_043

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9F_043 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0766

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6N9F|1|2a|C|936
6N9F|1|2a|A|937
6N9F|1|2a|A|938
6N9F|1|2a|G|939
*
6N9F|1|2a|C|1344
6N9F|1|2a|U|1345
6N9F|1|2a|A|1346
6N9F|1|2a|G|1347
6N9F|1|2a|U|1348
6N9F|1|2a|A|1349
6N9F|1|2a|A|1350
*
6N9F|1|2a|U|1372
6N9F|1|2a|G|1373
6N9F|1|2a|A|1374
6N9F|1|2a|A|1375
6N9F|1|2a|U|1376
6N9F|1|2a|A|1377
6N9F|1|2a|C|1378
6N9F|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S Ribosomal Protein S7

Chain 2i

30S ribosomal protein S9