J3_6N9F_051
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 6N9F|1|1A|U|529, 6N9F|1|1A|G|533
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N9F_051 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0824
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6N9F|1|1A|G|30
6N9F|1|1A|C|31
*
6N9F|1|1A|G|500
6N9F|1|1A|U|501
6N9F|1|1A|G|502
6N9F|1|1A|A|503
6N9F|1|1A|A|504
6N9F|1|1A|A|505
6N9F|1|1A|A|506
6N9F|1|1A|G|507
6N9F|1|1A|A|508
6N9F|1|1A|A|509
6N9F|1|1A|C|510
*
6N9F|1|1A|G|521
6N9F|1|1A|A|522
6N9F|1|1A|G|523
6N9F|1|1A|U|524
6N9F|1|1A|G|525
6N9F|1|1A|A|526
6N9F|1|1A|A|527
6N9F|1|1A|A|528
6N9F|1|1A|U|529
6N9F|1|1A|A|530
6N9F|1|1A|G|531
6N9F|1|1A|A|532
6N9F|1|1A|G|533
6N9F|1|1A|C|534
6N9F|1|1A|C|535
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1U
- 50S Ribosomal Protein L20
- Chain 1W
- 50S Ribosomal Protein L22
- Chain 1Y
- 50S ribosomal protein L24
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