J3_6N9F_059

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6N9F|1|1a|U|1212, 6N9F|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9F_059 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1714

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

6N9F|1|1a|C|990
6N9F|1|1a|U|991
6N9F|1|1a|U|992
6N9F|1|1a|G|993
6N9F|1|1a|A|994
6N9F|1|1a|C|995
6N9F|1|1a|A|996
6N9F|1|1a|U|997
*
6N9F|1|1a|A|1044
6N9F|1|1a|C|1045
6N9F|1|1a|A|1046
6N9F|1|1a|G|1047
*
6N9F|1|1a|C|1210
6N9F|1|1a|U|1211
6N9F|1|1a|U|1212
6N9F|1|1a|A|1213
6N9F|1|1a|C|1214
6N9F|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z