J3_6N9F_062

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6N9F|1|2A|U|504, 6N9F|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9F_062 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0743

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6N9F|1|2A|G|30
6N9F|1|2A|C|31
*
6N9F|1|2A|G|474
6N9F|1|2A|U|475
6N9F|1|2A|G|476
6N9F|1|2A|A|477
6N9F|1|2A|A|478
6N9F|1|2A|A|479
6N9F|1|2A|A|480
6N9F|1|2A|G|481
6N9F|1|2A|A|482
6N9F|1|2A|A|483
6N9F|1|2A|C|484
*
6N9F|1|2A|G|496
6N9F|1|2A|A|497
6N9F|1|2A|G|498
6N9F|1|2A|U|499
6N9F|1|2A|G|500
6N9F|1|2A|A|501
6N9F|1|2A|A|502
6N9F|1|2A|A|503
6N9F|1|2A|U|504
6N9F|1|2A|A|505
6N9F|1|2A|G|506
6N9F|1|2A|A|507
6N9F|1|2A|G|508
6N9F|1|2A|C|509
6N9F|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S Ribosomal Protein L20

Chain 2W

50S Ribosomal Protein L22

Chain 2Y

50S ribosomal protein L24