J3_6N9F_064

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6N9F|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9F_064 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0841

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6N9F|1|2A|C|297
6N9F|1|2A|G|298
6N9F|1|2A|A|299
6N9F|1|2A|A|300
6N9F|1|2A|G|301
*
6N9F|1|2A|C|316
6N9F|1|2A|G|317
6N9F|1|2A|C|318
6N9F|1|2A|C|319
6N9F|1|2A|A|320
6N9F|1|2A|G|321
6N9F|1|2A|A|322
6N9F|1|2A|G|323
6N9F|1|2A|A|324
6N9F|1|2A|G|325
*
6N9F|1|2A|C|337
6N9F|1|2A|G|338
6N9F|1|2A|U|339
6N9F|1|2A|A|340
6N9F|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S Ribosomal Protein L4

Chain 2Y

50S ribosomal protein L24