J3_6N9F_077

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

6N9F|1|2B|U|14, 6N9F|1|2B|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9F_077 not in the Motif Atlas

Homologous match to J3_9DFE_020

Geometric discrepancy: 0.1477

The information below is about J3_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6N9F|1|2B|C|11
6N9F|1|2B|C|12
6N9F|1|2B|A|13
6N9F|1|2B|U|14
6N9F|1|2B|A|15
6N9F|1|2B|G|16
*
6N9F|1|2B|C|68
6N9F|1|2B|G|69
*
6N9F|1|2B|U|108
6N9F|1|2B|C|109
6N9F|1|2B|G|110

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2Z

50S ribosomal protein L25