3D structure

PDB id
6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGAGCUA*UAG*CGAG
Length
14 nucleotides
Bulged bases
6ND5|1|1A|G|686, 6ND5|1|1A|G|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ND5_004 not in the Motif Atlas
Homologous match to J3_7RQB_004
Geometric discrepancy: 0.0336
The information below is about J3_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.4
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

6ND5|1|1A|C|683
6ND5|1|1A|G|684
6ND5|1|1A|A|685
6ND5|1|1A|G|686
6ND5|1|1A|C|687
6ND5|1|1A|U|688
6ND5|1|1A|A|689
*
6ND5|1|1A|U|773
6ND5|1|1A|A|774
6ND5|1|1A|G|775
*
6ND5|1|1A|C|791
6ND5|1|1A|G|792
6ND5|1|1A|A|793
6ND5|1|1A|G|794

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34
Chain 1D
50S ribosomal protein L2

Coloring options:


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