J3_6ND5_024
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ND5_024 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0666
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6ND5|1|1a|C|1063
6ND5|1|1a|G|1064
6ND5|1|1a|U|1065
6ND5|1|1a|C|1066
6ND5|1|1a|A|1067
6ND5|1|1a|G|1068
*
6ND5|1|1a|C|1107
6ND5|1|1a|G|1108
6ND5|1|1a|C|1109
6ND5|1|1a|A|1110
6ND5|1|1a|A|1111
6ND5|1|1a|C|1112
6ND5|1|1a|C|1113
*
6ND5|1|1a|G|1187
6ND5|1|1a|A|1188
6ND5|1|1a|C|1189
6ND5|1|1a|G|1190
6ND5|1|1a|A|1191
6ND5|1|1a|C|1192
6ND5|1|1a|G|1193
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1c
- 30S ribosomal protein S3
- Chain 1e
- 30S ribosomal protein S5
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
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