J3_6ND5_046

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ND5_046 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1179

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6ND5|1|2a|C|936
6ND5|1|2a|A|937
6ND5|1|2a|A|938
6ND5|1|2a|G|939
*
6ND5|1|2a|C|1344
6ND5|1|2a|U|1345
6ND5|1|2a|A|1346
6ND5|1|2a|G|1347
6ND5|1|2a|U|1348
6ND5|1|2a|A|1349
6ND5|1|2a|A|1350
*
6ND5|1|2a|U|1372
6ND5|1|2a|G|1373
6ND5|1|2a|A|1374
6ND5|1|2a|A|1375
6ND5|1|2a|U|1376
6ND5|1|2a|A|1377
6ND5|1|2a|C|1378
6ND5|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA