J3_6ND5_057

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6ND5|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ND5_057 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.046

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6ND5|1|1A|C|297
6ND5|1|1A|G|298
6ND5|1|1A|A|299
6ND5|1|1A|A|300
6ND5|1|1A|G|301
*
6ND5|1|1A|C|316
6ND5|1|1A|G|317
6ND5|1|1A|C|318
6ND5|1|1A|C|319
6ND5|1|1A|A|320
6ND5|1|1A|G|321
6ND5|1|1A|A|322
6ND5|1|1A|G|323
6ND5|1|1A|A|324
6ND5|1|1A|G|325
*
6ND5|1|1A|C|337
6ND5|1|1A|G|338
6ND5|1|1A|U|339
6ND5|1|1A|A|340
6ND5|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24