J3_6ND5_068

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ND5_068 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0595

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6ND5|1|2A|G|1424
6ND5|1|2A|G|1425
6ND5|1|2A|G|1426
6ND5|1|2A|A|1427
6ND5|1|2A|C|1428
6ND5|1|2A|G|1429
*
6ND5|1|2A|C|1564
6ND5|1|2A|C|1565
*
6ND5|1|2A|G|1568
6ND5|1|2A|A|1569
6ND5|1|2A|A|1570
6ND5|1|2A|A|1571
6ND5|1|2A|A|1572
6ND5|1|2A|G|1573
6ND5|1|2A|C|1574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2