J3_6ND6_035

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

6ND6|1|2A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ND6_035 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0755

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6ND6|1|2A|G|1344
6ND6|1|2A|C|1345
6ND6|1|2A|G|1346
6ND6|1|2A|G|1347
6ND6|1|2A|G|1348
6ND6|1|2A|A|1349
6ND6|1|2A|C|1350
*
6ND6|1|2A|G|1381
6ND6|1|2A|G|1382
6ND6|1|2A|C|1383
6ND6|1|2A|A|1384
6ND6|1|2A|G|1385
*
6ND6|1|2A|C|1402
6ND6|1|2A|C|1403

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23