J3_6ND6_062
3D structure
- PDB id
- 6ND6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 6ND6|1|1a|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ND6_062 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.144
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ND6|1|1a|C|1116
6ND6|1|1a|G|1117
6ND6|1|1a|C|1118
*
6ND6|1|1a|G|1155
6ND6|1|1a|G|1156
6ND6|1|1a|A|1157
6ND6|1|1a|C|1158
6ND6|1|1a|U|1159
6ND6|1|1a|G|1160
6ND6|1|1a|C|1161
*
6ND6|1|1a|G|1175
6ND6|1|1a|A|1176
6ND6|1|1a|G|1177
6ND6|1|1a|G|1178
6ND6|1|1a|A|1179
6ND6|1|1a|A|1180
6ND6|1|1a|G|1181
6ND6|1|1a|G|1182
6ND6|1|1a|A|1183
6ND6|1|1a|G|1184
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1i
- 30S ribosomal protein S9
- Chain 1n
- 30S ribosomal protein S14 type Z
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