J3_6ND6_069

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6ND6|1|2a|C|48, 6ND6|1|2a|A|50, 6ND6|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ND6_069 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0977

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ND6|1|2a|G|46
6ND6|1|2a|C|47
6ND6|1|2a|C|48
6ND6|1|2a|U|49
6ND6|1|2a|A|50
6ND6|1|2a|A|51
6ND6|1|2a|G|52
*
6ND6|1|2a|U|359
6ND6|1|2a|A|360
6ND6|1|2a|G|361
6ND6|1|2a|G|362
6ND6|1|2a|A|363
6ND6|1|2a|A|364
6ND6|1|2a|U|365
6ND6|1|2a|C|366
6ND6|1|2a|U|367
*
6ND6|1|2a|A|393
6ND6|1|2a|G|394
6ND6|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16