J3_6ND6_080

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6ND6|1|1a|U|1212, 6ND6|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ND6_080 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1681

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

6ND6|1|1a|C|990
6ND6|1|1a|U|991
6ND6|1|1a|U|992
6ND6|1|1a|G|993
6ND6|1|1a|A|994
6ND6|1|1a|C|995
6ND6|1|1a|A|996
6ND6|1|1a|U|997
*
6ND6|1|1a|A|1044
6ND6|1|1a|C|1045
6ND6|1|1a|A|1046
6ND6|1|1a|G|1047
*
6ND6|1|1a|C|1210
6ND6|1|1a|U|1211
6ND6|1|1a|U|1212
6ND6|1|1a|A|1213
6ND6|1|1a|C|1214
6ND6|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z