3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
6NDK|1|XA|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6NDK_032 not in the Motif Atlas
Homologous match to J3_6CZR_017
Geometric discrepancy: 0.1301
The information below is about J3_6CZR_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.3
Basepair signature
cWW-F-cWW-F-F-tWW-F-cWW-F
Number of instances in this motif group
5

Unit IDs

6NDK|1|XA|U|672
6NDK|1|XA|G|673
*
6NDK|1|XA|C|717
6NDK|1|XA|G|718
6NDK|1|XA|C|719
6NDK|1|XA|C|720
6NDK|1|XA|G|721
6NDK|1|XA|A|722
6NDK|1|XA|U|723
6NDK|1|XA|G|724
6NDK|1|XA|G|725
*
6NDK|1|XA|C|732
6NDK|1|XA|A|733
6NDK|1|XA|G|734

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XF
30S ribosomal protein S6
Chain XK
30S ribosomal protein S11
Chain XO
30S ribosomal protein S15
Chain XR
30S ribosomal protein S18
Chain YD
50S ribosomal protein L2

Coloring options:


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