J3_6NDK_052
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 6NDK|1|YA|G|2334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6NDK_052 not in the Motif Atlas
- Homologous match to J3_7RQB_011
- Geometric discrepancy: 0.1464
- The information below is about J3_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.4
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6NDK|1|YA|C|2295
6NDK|1|YA|U|2296
6NDK|1|YA|C|2297
*
6NDK|1|YA|G|2321
6NDK|1|YA|A|2322
6NDK|1|YA|G|2323
*
6NDK|1|YA|U|2332
6NDK|1|YA|A|2333
6NDK|1|YA|G|2334
6NDK|1|YA|A|2335
6NDK|1|YA|A|2336
6NDK|1|YA|G|2337
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XV
- Transfer RNA; tRNA
- Chain Y0
- 50S ribosomal protein L27
- Chain YB
- 5S ribosomal RNA; 5S rRNA
- Chain YG
- 50S ribosomal protein L5
- Chain YS
- 50S ribosomal protein L18
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