J3_6NDK_083

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6NDK|1|QA|C|48, 6NDK|1|QA|A|50, 6NDK|1|QA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NDK_083 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.12

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6NDK|1|QA|G|46
6NDK|1|QA|C|47
6NDK|1|QA|C|48
6NDK|1|QA|U|49
6NDK|1|QA|A|50
6NDK|1|QA|A|51
6NDK|1|QA|G|52
*
6NDK|1|QA|U|359
6NDK|1|QA|A|360
6NDK|1|QA|G|361
6NDK|1|QA|G|362
6NDK|1|QA|A|363
6NDK|1|QA|A|364
6NDK|1|QA|U|365
6NDK|1|QA|C|366
6NDK|1|QA|U|367
*
6NDK|1|QA|A|393
6NDK|1|QA|G|394
6NDK|1|QA|C|395

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9