J3_6NDK_084

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NDK_084 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1409

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6NDK|1|QA|C|936
6NDK|1|QA|A|937
6NDK|1|QA|A|938
6NDK|1|QA|G|939
*
6NDK|1|QA|C|1344
6NDK|1|QA|U|1345
6NDK|1|QA|A|1346
6NDK|1|QA|G|1347
6NDK|1|QA|U|1348
6NDK|1|QA|A|1349
6NDK|1|QA|A|1350
*
6NDK|1|QA|U|1372
6NDK|1|QA|G|1373
6NDK|1|QA|A|1374
6NDK|1|QA|A|1375
6NDK|1|QA|U|1376
6NDK|1|QA|A|1377
6NDK|1|QA|C|1378
6NDK|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9