J3_6NSH_012

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

6NSH|1|QA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NSH_012 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2172

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6NSH|1|QA|C|1237
6NSH|1|QA|A|1238
6NSH|1|QA|A|1239
6NSH|1|QA|U|1240
6NSH|1|QA|G|1241
*
6NSH|1|QA|C|1296
6NSH|1|QA|C|1297
6NSH|1|QA|C|1298
6NSH|1|QA|A|1299
6NSH|1|QA|G|1300
6NSH|1|QA|U|1301
6NSH|1|QA|U|1302
6NSH|1|QA|C|1303
*
6NSH|1|QA|G|1334
6NSH|1|QA|C|1335
6NSH|1|QA|C|1336
6NSH|1|QA|G|1337

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx