J3_6NSH_063

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NSH_063 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0793

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6NSH|1|RA|G|1424
6NSH|1|RA|G|1425
6NSH|1|RA|G|1426
6NSH|1|RA|A|1427
6NSH|1|RA|C|1428
6NSH|1|RA|G|1429
*
6NSH|1|RA|C|1564
6NSH|1|RA|C|1565
*
6NSH|1|RA|G|1568
6NSH|1|RA|A|1569
6NSH|1|RA|A|1570
6NSH|1|RA|A|1571
6NSH|1|RA|A|1572
6NSH|1|RA|G|1573
6NSH|1|RA|C|1574

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2