J3_6NTA_034

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NTA_034 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1804

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6NTA|1|XA|C|990
6NTA|1|XA|U|991
6NTA|1|XA|U|992
6NTA|1|XA|G|993
*
6NTA|1|XA|C|1045
6NTA|1|XA|A|1046
6NTA|1|XA|G|1047
*
6NTA|1|XA|C|1210
6NTA|1|XA|U|1211
6NTA|1|XA|U|1212
6NTA|1|XA|A|1213
6NTA|1|XA|C|1214
6NTA|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14 type Z