J3_6NTA_069

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGG*CUAGA*UGACG

Length

13 nucleotides

Bulged bases

6NTA|1|XA|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NTA_069 not in the Motif Atlas

Homologous match to J3_4LFB_015

Geometric discrepancy: 0.1081

The information below is about J3_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.5

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6NTA|1|XA|C|586
6NTA|1|XA|G|587
6NTA|1|XA|G|588
*
6NTA|1|XA|C|651
6NTA|1|XA|U|652
6NTA|1|XA|A|653
6NTA|1|XA|G|654
6NTA|1|XA|A|655
*
6NTA|1|XA|U|751
6NTA|1|XA|G|752
6NTA|1|XA|A|753
6NTA|1|XA|C|754
6NTA|1|XA|G|755

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XH

30S ribosomal protein S8

Chain XL

30S ribosomal protein S12

Chain XO

30S ribosomal protein S15

Chain XQ

30S ribosomal protein S17