J3_6NTA_070

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NTA_070 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1501

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

6NTA|1|XA|C|936
6NTA|1|XA|A|937
6NTA|1|XA|A|938
6NTA|1|XA|G|939
*
6NTA|1|XA|C|1344
6NTA|1|XA|U|1345
6NTA|1|XA|A|1346
6NTA|1|XA|G|1347
6NTA|1|XA|U|1348
6NTA|1|XA|A|1349
6NTA|1|XA|A|1350
*
6NTA|1|XA|U|1372
6NTA|1|XA|G|1373
6NTA|1|XA|A|1374
6NTA|1|XA|A|1375
6NTA|1|XA|U|1376
6NTA|1|XA|A|1377
6NTA|1|XA|C|1378
6NTA|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9