J3_6NTA_080

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

6NTA|1|QA|C|1158, 6NTA|1|QA|G|1160, 6NTA|1|QA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NTA_080 not in the Motif Atlas

Homologous match to J3_6CZR_025

Geometric discrepancy: 0.2812

The information below is about J3_6CZR_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.1

Basepair signature

cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

6NTA|1|QA|C|1116
6NTA|1|QA|G|1117
6NTA|1|QA|C|1118
*
6NTA|1|QA|G|1155
6NTA|1|QA|G|1156
6NTA|1|QA|A|1157
6NTA|1|QA|C|1158
6NTA|1|QA|U|1159
6NTA|1|QA|G|1160
6NTA|1|QA|C|1161
*
6NTA|1|QA|G|1175
6NTA|1|QA|A|1176
6NTA|1|QA|G|1177
6NTA|1|QA|G|1178
6NTA|1|QA|A|1179
6NTA|1|QA|A|1180
6NTA|1|QA|G|1181
6NTA|1|QA|G|1182
6NTA|1|QA|A|1183
6NTA|1|QA|G|1184

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QI

30S ribosomal protein S9

Chain QN

30S ribosomal protein S14 type Z