3D structure

PDB id
6NU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into unique features of the human mitochondrial ribosome recycling
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
CCAAACCCACUCCACCUUACUACCAGCAACCUUAGCCA*UUACAUA*UUGUG
Length
50 nucleotides
Bulged bases
6NU3|1|A|C|1693, 6NU3|1|A|C|1699, 6NU3|1|A|U|1701, 6NU3|1|A|C|1707, 6NU3|1|A|A|1708, 6NU3|1|A|G|1709, 6NU3|1|A|C|1711, 6NU3|1|A|A|1712, 6NU3|1|A|A|1713, 6NU3|1|A|C|1714, 6NU3|1|A|C|1715, 6NU3|1|A|U|1716, 6NU3|1|A|A|1731, 6NU3|1|A|C|1732, 6NU3|1|A|U|1766
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6NU3|1|A|C|1684
6NU3|1|A|C|1685
6NU3|1|A|A|1686
6NU3|1|A|A|1687
6NU3|1|A|A|1688
6NU3|1|A|C|1689
6NU3|1|A|C|1690
6NU3|1|A|C|1691
6NU3|1|A|A|1692
6NU3|1|A|C|1693
6NU3|1|A|U|1694
6NU3|1|A|C|1695
6NU3|1|A|C|1696
6NU3|1|A|A|1697
6NU3|1|A|C|1698
6NU3|1|A|C|1699
6NU3|1|A|U|1700
6NU3|1|A|U|1701
6NU3|1|A|A|1702
6NU3|1|A|C|1703
6NU3|1|A|U|1704
6NU3|1|A|A|1705
6NU3|1|A|C|1706
6NU3|1|A|C|1707
6NU3|1|A|A|1708
6NU3|1|A|G|1709
6NU3|1|A|C|1711
6NU3|1|A|A|1712
6NU3|1|A|A|1713
6NU3|1|A|C|1714
6NU3|1|A|C|1715
6NU3|1|A|U|1716
6NU3|1|A|U|1717
6NU3|1|A|A|1718
6NU3|1|A|G|1719
6NU3|1|A|C|1720
6NU3|1|A|C|1721
6NU3|1|A|A|1722
*
6NU3|1|A|U|1729
6NU3|1|A|U|1730
6NU3|1|A|A|1731
6NU3|1|A|C|1732
6NU3|1|A|A|1737
6NU3|1|A|U|1738
6NU3|1|A|A|1739
*
6NU3|1|A|U|1758
6NU3|1|A|U|1759
6NU3|1|A|G|1760
6NU3|1|A|U|1766
6NU3|1|A|G|1767

Current chains

Chain A
16S rRNA

Nearby chains

Chain 2
39S ribosomal protein L34, mitochondrial
Chain 3
39S ribosomal protein L35, mitochondrial
Chain 5
39S ribosomal protein L37, mitochondrial
Chain 9
39S ribosomal protein L41, mitochondrial
Chain F
39S ribosomal protein L4, mitochondrial
Chain H
39S ribosomal protein L9, mitochondrial
Chain M
39S ribosomal protein L15, mitochondrial
Chain U
39S ribosomal protein L23, mitochondrial
Chain V
39S ribosomal protein L24, mitochondrial
Chain X
39S ribosomal protein L28, mitochondrial
Chain Y
39S ribosomal protein L47, mitochondrial
Chain i
39S ribosomal protein L51, mitochondrial
Chain q
Growth arrest and DNA damage-inducible proteins-interacting protein 1

Coloring options:

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