6NU3 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6NU3_011 | 1/A/2035:2040 | No text annotation | homologous HL_4WF9_025 HL_27530.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6NU3_001 | No text annotation | ||
| HL_6NU3_002 | No text annotation | ||
| HL_6NU3_003 | GNRA | ||
| HL_6NU3_004 | No text annotation | ||
| HL_6NU3_005 | No text annotation | ||
| HL_6NU3_006 | T-loop with 2 stacked bulged bases | ||
| HL_6NU3_007 | No text annotation | ||
| HL_6NU3_008 | No text annotation | ||
| HL_6NU3_009 | No text annotation | ||
| HL_6NU3_010 | No text annotation | ||
| HL_6NU3_012 | Externally structured | ||
| HL_6NU3_013 | GNRA | ||
| HL_6NU3_014 | No text annotation | ||
| HL_6NU3_015 | No text annotation | ||
| HL_6NU3_016 | No text annotation | ||
| HL_6NU3_063 | GNRA wlth tandem sheared | ||
| HL_6NU3_017 | No text annotation | ||
| HL_6NU3_018 | No text annotation | ||
| HL_6NU3_019 | No text annotation | ||
| HL_6NU3_020 | Mini UNCG | ||
| HL_6NU3_021 | No text annotation | ||
| HL_6NU3_022 | No text annotation | ||
| HL_6NU3_023 | No text annotation | ||
| HL_6NU3_024 | No text annotation | ||
| HL_6NU3_025 | UNCG variation | ||
| HL_6NU3_026 | No text annotation | ||
| HL_6NU3_027 | No text annotation | ||
| HL_6NU3_028 | No text annotation | ||
| HL_6NU3_029 | No text annotation | ||
| HL_6NU3_030 | No text annotation | ||
| HL_6NU3_031 | No text annotation | ||
| HL_6NU3_032 | GNRA | ||
| HL_6NU3_033 | No text annotation | ||
| HL_6NU3_034 | GNRA variation | ||
| HL_6NU3_035 | No text annotation | ||
| HL_6NU3_036 | GNRA | ||
| HL_6NU3_037 | GNRA | ||
| HL_6NU3_038 | Externally structured | ||
| HL_6NU3_039 | No text annotation | ||
| HL_6NU3_040 | No text annotation | ||
| HL_6NU3_041 | No text annotation | ||
| HL_6NU3_042 | No text annotation | ||
| HL_6NU3_043 | Mini UNCG | ||
| HL_6NU3_044 | Mini UNCG | ||
| HL_6NU3_045 | Mini UNCG | ||
| HL_6NU3_046 | Externally structured | ||
| HL_6NU3_047 | No text annotation | ||
| HL_6NU3_048 | No text annotation | ||
| HL_6NU3_064 | No text annotation | ||
| HL_6NU3_049 | GNRA | ||
| HL_6NU3_050 | No text annotation | ||
| HL_6NU3_051 | No text annotation | ||
| HL_6NU3_052 | No text annotation | ||
| HL_6NU3_053 | No text annotation | ||
| HL_6NU3_054 | No text annotation | ||
| HL_6NU3_055 | Externally structured | ||
| HL_6NU3_056 | No text annotation | ||
| HL_6NU3_057 | No text annotation | ||
| HL_6NU3_058 | No text annotation | ||
| HL_6NU3_059 | Externally structured | ||
| HL_6NU3_060 | No text annotation | ||
| HL_6NU3_061 | tRNA D-loop | ||
| HL_6NU3_062 | Anticodon loop related |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6NU3_113 | 1/A/2946:2948, 1/A/2976:2980 | No text annotation | homologous IL_9DFE_094 IL_36931.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6NU3_001 | Single bulged A | ||
| IL_6NU3_002 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6NU3_003 | Isolated non-canonical cWW pair | ||
| IL_6NU3_004 | Single stack bend | ||
| IL_6NU3_005 | No text annotation | ||
| IL_6NU3_006 | No text annotation | ||
| IL_6NU3_007 | Isolated non-canonical cWW pair | ||
| IL_6NU3_008 | tHW-tHW cross-strand stack | ||
| IL_6NU3_009 | Isolated non-canonical cWW pair | ||
| IL_6NU3_010 | Isolated non-canonical cWW pair | ||
| IL_6NU3_011 | Single bulged A | ||
| IL_6NU3_012 | Major groove platform with extra cWW | ||
| IL_6NU3_013 | Multiple bulged bases | ||
| IL_6NU3_014 | No text annotation | ||
| IL_6NU3_015 | No text annotation | ||
| IL_6NU3_105 | No text annotation | ||
| IL_6NU3_016 | Not an internal loop | ||
| IL_6NU3_106 | No text annotation | ||
| IL_6NU3_017 | 90 degree turn | ||
| IL_6NU3_018 | No text annotation | ||
| IL_6NU3_019 | Single bulged C | ||
| IL_6NU3_020 | UAA/GAN | ||
| IL_6NU3_021 | Isolated near basepair | ||
| IL_6NU3_022 | No text annotation | ||
| IL_6NU3_023 | No text annotation | ||
| IL_6NU3_024 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6NU3_025 | No text annotation | ||
| IL_6NU3_026 | No text annotation | ||
| IL_6NU3_107 | No text annotation | ||
| IL_6NU3_027 | No text annotation | ||
| IL_6NU3_028 | Isolated tWW turn | ||
| IL_6NU3_029 | Major groove platform; stack outside cWW | ||
| IL_6NU3_108 | No text annotation | ||
| IL_6NU3_030 | Intercalated tWH | ||
| IL_6NU3_031 | No text annotation | ||
| IL_6NU3_032 | Single bulged A | ||
| IL_6NU3_033 | Minor groove platform, major groove intercalation | ||
| IL_6NU3_034 | Major groove intercalation | ||
| IL_6NU3_035 | Multiple bulged bases | ||
| IL_6NU3_036 | No text annotation | ||
| IL_6NU3_037 | No text annotation | ||
| IL_6NU3_038 | No text annotation | ||
| IL_6NU3_039 | Single bulged U | ||
| IL_6NU3_040 | Minor groove platform | ||
| IL_6NU3_041 | Minor groove platform | ||
| IL_6NU3_042 | No text annotation | ||
| IL_6NU3_043 | Double sheared | ||
| IL_6NU3_044 | Single stack bend | ||
| IL_6NU3_045 | Major groove platform | ||
| IL_6NU3_046 | No text annotation | ||
| IL_6NU3_047 | No text annotation | ||
| IL_6NU3_048 | No text annotation | ||
| IL_6NU3_049 | Minor groove platform | ||
| IL_6NU3_050 | Major groove platform | ||
| IL_6NU3_051 | Isolated non-canonical cWW with bulges | ||
| IL_6NU3_052 | Multiple bulged bases | ||
| IL_6NU3_053 | No text annotation | ||
| IL_6NU3_054 | Single bulged A | ||
| IL_6NU3_055 | Isolated non-canonical cWW pair | ||
| IL_6NU3_056 | No text annotation | ||
| IL_6NU3_057 | No text annotation | ||
| IL_6NU3_058 | No text annotation | ||
| IL_6NU3_059 | Isolated non-canonical cWW pair | ||
| IL_6NU3_060 | Single bulged A | ||
| IL_6NU3_061 | Single bulged A | ||
| IL_6NU3_062 | Minor groove platform | ||
| IL_6NU3_063 | No text annotation | ||
| IL_6NU3_064 | Kink-turn with non-sequential stacking | ||
| IL_6NU3_065 | Major groove platform; stack outside cWW | ||
| IL_6NU3_109 | No text annotation | ||
| IL_6NU3_066 | No text annotation | ||
| IL_6NU3_067 | Single bulged U | ||
| IL_6NU3_068 | C-loop | ||
| IL_6NU3_114 | Single bulged G | ||
| IL_6NU3_069 | Isolated non-canonical cWW pair | ||
| IL_6NU3_070 | No text annotation | ||
| IL_6NU3_071 | Kink-turn related | ||
| IL_6NU3_072 | Major groove intercalation | ||
| IL_6NU3_073 | No text annotation | ||
| IL_6NU3_110 | No text annotation | ||
| IL_6NU3_074 | No text annotation | ||
| IL_6NU3_075 | No text annotation | ||
| IL_6NU3_115 | No text annotation | ||
| IL_6NU3_076 | No text annotation | ||
| IL_6NU3_077 | No text annotation | ||
| IL_6NU3_078 | No text annotation | ||
| IL_6NU3_111 | No text annotation | ||
| IL_6NU3_079 | No text annotation | ||
| IL_6NU3_080 | Isolated non-canonical cWW pair | ||
| IL_6NU3_081 | No text annotation | ||
| IL_6NU3_116 | No text annotation | ||
| IL_6NU3_082 | Isolated non-canonical cWW with bulges | ||
| IL_6NU3_083 | Single bulged G | ||
| IL_6NU3_117 | No text annotation | ||
| IL_6NU3_084 | No text annotation | ||
| IL_6NU3_112 | No text annotation | ||
| IL_6NU3_085 | No text annotation | ||
| IL_6NU3_086 | No text annotation | ||
| IL_6NU3_087 | Single bulged C | ||
| IL_6NU3_088 | No text annotation | ||
| IL_6NU3_118 | Minor groove platform | ||
| IL_6NU3_089 | No text annotation | ||
| IL_6NU3_090 | No text annotation | ||
| IL_6NU3_091 | Double sheared | ||
| IL_6NU3_092 | Multiple bulged bases | ||
| IL_6NU3_093 | No text annotation | ||
| IL_6NU3_094 | No text annotation | ||
| IL_6NU3_095 | No text annotation | ||
| IL_6NU3_096 | No text annotation | ||
| IL_6NU3_097 | No text annotation | ||
| IL_6NU3_098 | No text annotation | ||
| IL_6NU3_099 | No text annotation | ||
| IL_6NU3_100 | No text annotation | ||
| IL_6NU3_101 | No text annotation | ||
| IL_6NU3_102 | No text annotation | ||
| IL_6NU3_103 | No text annotation | ||
| IL_6NU3_104 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_6NU3_006 | 1/A/1865:1875, 1/A/1899:1903, 1/A/2019:2022, 1/A/2271:2275, 1/A/2290:2300 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6NU3_014 | No text annotation | ||
| J3_6NU3_015 | No text annotation | ||
| J3_6NU3_016 | No text annotation | ||
| J3_6NU3_017 | No text annotation | ||
| J3_6NU3_001 | No text annotation | ||
| J3_6NU3_002 | No text annotation | ||
| J3_6NU3_018 | No text annotation | ||
| J3_6NU3_003 | No text annotation | ||
| J3_6NU3_004 | No text annotation | ||
| J3_6NU3_019 | No text annotation | ||
| J3_6NU3_005 | No text annotation | ||
| J3_6NU3_006 | No text annotation | ||
| J3_6NU3_007 | No text annotation | ||
| J3_6NU3_008 | No text annotation | ||
| J3_6NU3_020 | No text annotation | ||
| J3_6NU3_009 | No text annotation | ||
| J3_6NU3_010 | No text annotation | ||
| J3_6NU3_011 | No text annotation | ||
| J3_6NU3_012 | No text annotation | ||
| J3_6NU3_013 | No text annotation | ||
| J4_6NU3_001 | No text annotation | ||
| J4_6NU3_002 | No text annotation | ||
| J4_6NU3_003 | No text annotation | ||
| J4_6NU3_004 | No text annotation | ||
| J4_6NU3_005 | No text annotation | ||
| J4_6NU3_006 | No text annotation | ||
| J4_6NU3_007 | No text annotation | ||
| J4_6NU3_008 | No text annotation | ||
| J4_6NU3_010 | No text annotation | ||
| J4_6NU3_009 | No text annotation | ||
| J5_6NU3_001 | No text annotation | ||
| J5_6NU3_002 | No text annotation | ||
| J5_6NU3_003 | No text annotation | ||
| J5_6NU3_004 | No text annotation | ||
| J5_6NU3_007 | No text annotation | ||
| J5_6NU3_005 | No text annotation | ||
| J6_6NU3_002 | No text annotation | ||
| J6_6NU3_001 | No text annotation |
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