J3_6NUO_041

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

6NUO|1|YA|U|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NUO_041 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.0891

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6NUO|1|YA|U|258
6NUO|1|YA|A|259
6NUO|1|YA|A|260
6NUO|1|YA|A|261
6NUO|1|YA|C|262
*
6NUO|1|YA|G|282
6NUO|1|YA|G|283
6NUO|1|YA|G|284
6NUO|1|YA|U|285
6NUO|1|YA|C|286
6NUO|1|YA|G|287
6NUO|1|YA|U|288
6NUO|1|YA|G|289
*
6NUO|1|YA|C|396
6NUO|1|YA|G|397

Current chains

Chain YA

23S rRNA

Nearby chains