J3_6NUO_052

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

6NUO|1|YA|G|2843, 6NUO|1|YA|A|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NUO_052 not in the Motif Atlas

Homologous match to J3_7RQB_014

Geometric discrepancy: 0.0902

The information below is about J3_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95952.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6NUO|1|YA|C|2824
6NUO|1|YA|C|2825
*
6NUO|1|YA|G|2841
6NUO|1|YA|U|2842
6NUO|1|YA|G|2843
6NUO|1|YA|G|2844
6NUO|1|YA|A|2845
6NUO|1|YA|U|2846
*
6NUO|1|YA|A|2892
6NUO|1|YA|A|2893
6NUO|1|YA|U|2894
6NUO|1|YA|C|2895
6NUO|1|YA|G|2896

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y5

50S ribosomal protein L32

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17