J3_6NWY_055

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NWY_055 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1715

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

6NWY|1|QA|C|936
6NWY|1|QA|A|937
6NWY|1|QA|A|938
6NWY|1|QA|G|939
*
6NWY|1|QA|C|1344
6NWY|1|QA|U|1345
6NWY|1|QA|A|1346
6NWY|1|QA|G|1347
6NWY|1|QA|U|1348
6NWY|1|QA|A|1349
6NWY|1|QA|A|1350
*
6NWY|1|QA|U|1372
6NWY|1|QA|G|1373
6NWY|1|QA|A|1374
6NWY|1|QA|A|1375
6NWY|1|QA|U|1376
6NWY|1|QA|A|1377
6NWY|1|QA|C|1378
6NWY|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9