J3_6NWY_078

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NWY_078 not in the Motif Atlas

Homologous match to J3_9DFE_009

Geometric discrepancy: 0.3488

The information below is about J3_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NWY|1|RA|G|1055
6NWY|1|RA|G|1056
6NWY|1|RA|A|1057
*
6NWY|1|RA|U|1081
6NWY|1|RA|U|1082
6NWY|1|RA|U|1083
6NWY|1|RA|A|1084
6NWY|1|RA|A|1085
6NWY|1|RA|A|1086
6NWY|1|RA|G|1087
*
6NWY|1|RA|C|1102
6NWY|1|RA|A|1103
6NWY|1|RA|C|1104

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36