J3_6O3M_005

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O3M_005 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1129

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6O3M|1|QA|U|943
6O3M|1|QA|G|944
6O3M|1|QA|G|945
6O3M|1|QA|A|946
*
6O3M|1|QA|U|1235
6O3M|1|QA|A|1236
6O3M|1|QA|C|1237
*
6O3M|1|QA|G|1337
6O3M|1|QA|G|1338
6O3M|1|QA|A|1339
6O3M|1|QA|A|1340

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QI

30S ribosomal protein S9

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx

Chain QV

Transfer RNA; tRNA