J3_6O3M_017

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O3M_017 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.0994

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6O3M|1|RA|C|698
6O3M|1|RA|A|699
6O3M|1|RA|G|700
*
6O3M|1|RA|C|732
6O3M|1|RA|G|733
6O3M|1|RA|A|734
6O3M|1|RA|A|735
6O3M|1|RA|C|736
*
6O3M|1|RA|G|760
6O3M|1|RA|A|761
6O3M|1|RA|U|762
6O3M|1|RA|G|763

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2