3D structure

PDB id
6O3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
CAUC*GUU*AUUAAAG
Length
14 nucleotides
Bulged bases
6O3M|1|RA|A|2518, 6O3M|1|RA|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6O3M_024 not in the Motif Atlas
Homologous match to J3_7RQB_012
Geometric discrepancy: 0.1091
The information below is about J3_7RQB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.3
Basepair signature
cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
4

Unit IDs

6O3M|1|RA|C|2517
6O3M|1|RA|A|2518
6O3M|1|RA|U|2519
6O3M|1|RA|C|2520
*
6O3M|1|RA|G|2545
6O3M|1|RA|U|2546
6O3M|1|RA|U|2547
*
6O3M|1|RA|A|2561
6O3M|1|RA|U|2562
6O3M|1|RA|U|2563
6O3M|1|RA|A|2564
6O3M|1|RA|A|2565
6O3M|1|RA|A|2566
6O3M|1|RA|G|2567

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RE
50S ribosomal protein L3
Chain RO
50S ribosomal protein L14

Coloring options:


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