J3_6O3M_024

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6O3M|1|RA|A|2518, 6O3M|1|RA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O3M_024 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1091

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6O3M|1|RA|C|2517
6O3M|1|RA|A|2518
6O3M|1|RA|U|2519
6O3M|1|RA|C|2520
*
6O3M|1|RA|G|2545
6O3M|1|RA|U|2546
6O3M|1|RA|U|2547
*
6O3M|1|RA|A|2561
6O3M|1|RA|U|2562
6O3M|1|RA|U|2563
6O3M|1|RA|A|2564
6O3M|1|RA|A|2565
6O3M|1|RA|A|2566
6O3M|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14